Day-to-day methods, code, and results, shared openly to support reproducibility. Entries are grouped by project below; each entry links to the previous and next entry in its project.

Jump to: Recent · Hatchery conditioning for climate-resilient oyster seed · Ribosomal DNA copy number in Pacific oysters · Genomic markers of mussel attachment · Gene expression and behavior in sockeye salmon · Triploidy and marine heatwaves in Pacific oysters · DNA methylation in diploid and triploid oysters · Guides & protocols · Monthly updates · All entries by date

Recent entries

Projects

Hatchery conditioning for climate-resilient oyster seed

USDA NIFA Special Research Grants for Aquaculture Research (SRGARP) · Crassostrea gigas · 2023 · 4 entries

project summary

  1. Mar 2023USDA-SRGARP-gigas-carryover pilot Part 1
  2. Mar 2023USDA-SRGARP-gigas-carryover pilot Part 2
  3. Apr 2023USDA-SRGARP-gigas-carryover pilot Part 3
  4. Apr 2023USDA-SRGARP-gigas-carryover setup Part 1

Ribosomal DNA copy number in Pacific oysters

USDA NRSP-8 National Animal Genome Research Program · Crassostrea gigas · 2023 · 2 entries

project summary

  1. Feb 2023USDA-NRSP-8-gigas-rDNA Analysis Part 1
  2. Apr 2023USDA-NRSP-8-gigas-rDNA Analysis Part 2

Genomic markers of mussel attachment

Pacific States Marine Fisheries Commission (PSMFC) · Mytilus trossulus, Mytilus galloprovincialis · 2022 · 3 entries

code & data project summary

  1. Apr 2022How to collect byssal threads
  2. Apr 2022PSMFC-mytilus-byssus-pilot Analysis Part 1
  3. Oct 2022PSMFC-mytilus-byssus-pilot Analysis Part 2

Gene expression and behavior in sockeye salmon

Oncorhynchus nerka · 2022 · 2 entries

code & data project summary

  1. Sep 2022Berdahl-sockeye-salmon analysis - Part 1
  2. Sep 2022Berdahl-sockeye-salmon analysis - Part 2

Triploidy and marine heatwaves in Pacific oysters

NOAA National Oceanographic Partnership Program (NOPP) · Crassostrea gigas · 2020-2022 · 11 entries

code & data project summary

  1. Nov 2020Pt. Whitney Tank Build - update 1
  2. Nov 2020Pt. Whitney Tank Build - update 2
  3. Dec 2020Pt. Whitney Tank Build - update 3
  4. Oct 2021RNA extractions - sample analysis
  5. Dec 2021Citrate Synthase Assay
  6. Feb 2022PRS histology sample submission
  7. Feb 2022NOPP-gigas-ploidy-temp analysis - Part 1
  8. Mar 2022Oyster family transfer
  9. Jun 2022NOPP-gigas-ploidy-temp analysis - Part 2
  10. Sep 2022NOPP-gigas-ploidy-temp analysis - Part 3
  11. Sep 2022NOPP-gigas-ploidy-temp analysis - Part 4

DNA methylation in diploid and triploid oysters

Crassostrea gigas · 2021 · 6 entries

project summary

  1. Mar 2021Bisulfite sequencing analysis - Part 1
  2. Apr 2021Bisulfite sequencing analysis - Part 2
  3. Apr 2021Bisulfite sequencing analysis - Part 3
  4. Oct 2021Bisulfite sequencing analysis - Part 4
  5. Oct 2021Bisulfite sequencing analysis - Part 5
  6. Nov 2021Bisulfite sequencing analysis - Part 6

Guides & protocols

Monthly updates

Goals, progress, and running notes across projects.

Browse all entries by date → · Tag index · RSS