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Background

We sent 72 samples for RNA sequencing (TagSeq) to the Genomic Sequencing and Analysis Facility at the University of Texas at Austin. Here is a list of the samples:

The sample list, with RNA results, can be found here.

The zipped fastq files are available on gannet here

Here is the multiQC report that GSAF provided.

For analysis I will be leaning on notebook entries by:

  1. Laura Spencer;
  2. Ariana Huffmyer; and
  3. Sam Gurr (oyster TagSeq pipeline; the original notebook URL moved, so this links the archived source)